This application enables to use interactively the metagene package. This R package produces Metagene-like plots to compare the behavior of DNA-interacting proteins at selected groups of features.

Load a metagene object produced during a previous session.
Create a metagene object from scratch with indexed BAM and BED files.

Here is the design contained in the current metagene if any.

Save Current Design
In order to represent the genomic coverages in a metagene plot, the coverages must be converted in matrix format. Regions are binned to reduce computation time for the following steps. During this step, the noise can be removed using one or more controls and the coverages can be normalized to allow comparison of multiple experiments.
Here is a subset of the matrix contained in the current metagene if any.


Produce a metagene plot.